Estimation of time since death using comparative proteomic and metabolomic approaches

Pesko, Bogumila Katarzyna (2017) Estimation of time since death using comparative proteomic and metabolomic approaches. PhD thesis, University of Glasgow.

Abstract

The success of forensic investigation very often depends on the establishment of the correct timeline of events. In the investigation of fatalities, this depends greatly on the estimation of the time since death of the victim. Current methods lead to inaccurate results and depend greatly on the experience of the investigator. Pathologists estimate the time since death based on visual inspection of the bodies as well as body temperature measurement. Only very short post-mortem intervals (PMIs) can be evaluated with some degree of certainty.
This investigation used untargeted proteomic and metabolomic approaches to identify potential molecular markers (proteins, metabolites) which could help to quantify post-mortem changes and aid PMI estimation.
Animal models were used in the initial stages of the project. Aged beef meat (stored at 4°C for 13 days) and rat muscle samples (intact cadavers stored at ambient temperature for 3 days) were sampled at 24 h time intervals. In the final stages of the project, human tissue samples were collected at the Forensic Anthropology Centre at Texas State University (San Marcos, Texas). Muscle samples were collected at various times post-mortem from 6 different subjects over the period of two weeks. For the proteomics experiment, 0.5g of tissue was homogenized in extraction buffer consisting of urea, thiourea and 3-((3-cholamidopropyl) dimethylammonio)-1-propanesulfonate (CHAPS). Protein separation was carried out using two-dimensional gel electrophoresis. Protein identification was performed using liquid chromatography-tandem mass spectrometry. For the metabolomics experiment, 0.5g of tissue was homogenized in chloroform/methanol/water solution. The extracted samples were analysed using liquid chromatography-mass spectrometry as well as gas chromatography – mass spectrometry.
The investigation allowed the identification of potential biomarker candidates. The proteins of interest varied between the sampled mammals. However, myosin and actin appear as promising candidates for all three species. The metabolomics experiments yielded a large number of possible biomarker candidates. Both liquid and gas chromatography approaches were successfully applied, pointing towards various compounds. Proteogenic amino acids were identified as main compounds of interest in all species using both methods.
The study has shown that both proteomic and metabolomic approaches can be successfully applied in forensic medical science and can help to find PMI markers. Using the untargeted approach gives the advantage of looking at a whole range of detected molecules and choosing the most appropriate ones for the task. Furthermore, the combination of these two approaches gives a deeper insight into the post-mortem biological processes. The biomarker candidates proposed in this study require further validation in a larger cohort of subjects.

• Item Type: Thesis (PhD)
• Qualification Level: Doctoral
• Keywords: Post-mortem interval, time since death, forensics, post-mortem tissue, metabolomics, proteomics, biomarkers.
• Subjects: Q Science > Q Science (General); Q Science > QD Chemistry; R Medicine > RB Pathology
• Colleges/Schools: College of Medical Veterinary and Life Sciences > School of Infection & Immunity; College of Medical Veterinary and Life Sciences > School of Medicine, Dentistry & Nursing
• Funder's Name: Engineering and Physical Sciences Research Council (EPSRC)
• Supervisor's Name: Burchmore, Dr. Richard
• Date of Award: 2017
• Depositing User: Miss Bogumila Pesko
• Unique ID: glathesis:2017-8179
• Copyright: Copyright of this thesis is held by the author.
• Date Deposited: 18 May 2017 07:17
• Last Modified: 25 Jul 2017 12:46
• URI: https://theses.gla.ac.uk/id/eprint/8179